PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G135700.4
Common NameB456_011G135700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 121aa    MW: 13493.4 Da    PI: 8.6983
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G135700.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.43.8e-0648871054
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        + R d++ +++ +L++l+ +      +K + a++L +A+eYI+ L
  Gorai.011G135700.4 48 KDRKDKVGERIVTLQQLVSPY-----GKTDTASVLLQAMEYIQFL 87
                        78999999**********999.....9****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.1E-103798IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.6743887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1239105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00174493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.55E-54892No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MQTLYSCENG IEVRTMMENK RSPCSVDHGS FTPLASKRQK SDLSISTKDR KDKVGERIVT  60
LQQLVSPYGK TDTASVLLQA MEYIQFLHEQ VKVLSAPYLQ TSPTNNMQAS IKPAQVQKED  120
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455223.17e-81PREDICTED: transcription factor bHLH113-like isoform X2
SwissprotQ8GXT31e-19BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A0D2SZF58e-86A0A0D2SZF5_G
STRINGGLYMA07G32980.17e-51(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.53e-41bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]